Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRP | rs3904551 | chr1:95277409 | C/T | 1.07E-6 | 207 | 11.2 | 14.87 | 16.53 | KM Plot |
KIRP | rs3920862 | chr11:34795679 | A/T | 0 | 214 | 15.88 | 16.72 | 3.83 | KM Plot |
KIRP | rs405566 | chr19:6691085 | G/A | 0.000394 | 200 | 18 | 13.03 | 6.53 | KM Plot |
KIRP | rs407101 | chr1:235693571 | T/C | 0.00011 | 206 | 16.43 | 16.45 | 11.43 | KM Plot |
KIRP | rs4114992 | chr10:75566829 | A/G | 5.92E-9 | 214 | 16.53 | 13.73 | 5.38 | KM Plot |
KIRP | rs41266839 | chr6:26409890 | G/C | 2.31E-7 | 213 | 16.43 | 13.6 | 9.77 | KM Plot |
KIRP | rs41280382 | chr10:74894796 | A/G | 5.34E-12 | 213 | 16.73 | 11.77 | 5.6 | KM Plot |
KIRP | rs41290536 | chr10:102034474 | T/C | 6.35E-6 | 213 | 16.43 | 22.77 | 3.6 | KM Plot |
KIRP | rs41299242 | chr10:75007939 | T/C | 4.52E-12 | 214 | 16.53 | 11.77 | 5.6 | KM Plot |
KIRP | rs41343546 | chr1:45908263 | A/G | 4.61E-13 | 214 | 15.2 | 17 | 9 | KM Plot |
KIRP | rs4145020 | chr10:63432698 | T/C | 0 | 213 | 18 | 7.92 | 3.38 | KM Plot |
KIRP | rs418710 | chr14:59179402 | G/A | 7.71E-7 | 209 | 16.43 | 16.93 | 10.83 | KM Plot |
KIRP | rs419074 | chr14:59178014 | C/T | 6.34E-7 | 212 | 15.75 | 16.93 | 10.83 | KM Plot |
KIRP | rs421147 | chr19:6691424 | T/G | 0.000394 | 201 | 18 | 13.03 | 3.87 | KM Plot |
KIRP | rs4262289 | chr8:30049104 | C/T | 1.17E-6 | 211 | 15.33 | 18.25 | 0.2 | KM Plot |